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fDesc[0] = "UGENE is a free cross-platform genome analysis suite.<br /> It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.<br /> <br /> Main features:<br /> <br /> Integrated tools <br /> <br /> -Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; <br /> -HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; <br /> -PCR Primers design using Primer 3; <br /> -Cloning in silico capabilities; <br /> -Queries to NCBI BLAST and CDD databases; <br /> -Protein secondary structure prediction using GOR IV and PSIPRED; <br /> -Phylogenetic analysis with Phylip; <br /> -Search for restriction enzymes and integration with REBASE; <br /> -Extremely fast repeat finder; <br /> -DNA reference assembly using Bowtie; <br /> -Search for transcription factor binding sites using SITECON; <br /> -Protein back translation; <br /> -ORF finder; <br /> -Complete Smith-Waterman algorithm implementation; <br /> -Support for external tools: BLAST , MAFFT, T-Coffee. <br /> <br /> User interface <br /> <br /> -Visual and interactive genome browsing including circular plasmid view; <br /> -Multiple alignment editor; <br /> -Chromatograms visualization; <br /> -3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support; <br /> -Phylogenetic tree viewer; <br /> -Dot plot visualization; <br /> -Query designer enables search for complex annotation patterns; <br /> -Easy to use workflow designer for custom computational workflows. <br /> <br /> High performance computing in UGENE <br /> <br /> -Complete support of modern multicore processors and SSE instructions; <br /> -Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream; <br /> -Support for cloud computing: running computational tasks on Amazon EC2 cloud; <br /> -Support for supercomputers and distributed computing. <br /> <br /> Cooperation <br /> <br /> -Can be used for education purposes in schools and universities; <br /> -Features to be included into the next release are initiated by users; <br /> -UGENE team is ready for collaboration in related projects, both free or commercial.";

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