Clone manager 8 sequence alignment in Title/Summary

Clone Manager Professional

Clone Manager Professional provides a comprehensive set of tools for enzyme operations, cloning simulation, graphic map drawing, primer design and analysis, global and local sequence alignments, similarity searches, and laboratory-sized sequence assembly projects.

• Publisher: Scientific & Educational Software
• Home page: www.scied.com
• Last updated: August 17th, 2016

Clone Manager

Clone Manager acts as an expert system to help with cloning simulation, enzyme operations and graphic map drawing. You can also use Clone Manager as a quick and easy way to view or edit sequence files, find open reading frames, translate genes, or find genes or text in files.

• Publisher: Scientific & Educational Software
• Last updated: February 10th, 2016

BioEdit

BioEdit is a biological sequence alignment editor. It allows you to view and manipulate sequences with simple point-and-click operations. This program comes with a plasmid drawing interface for automated creation of plasmid vector graphic from a DNA sequence.

• Publisher: Tom Hall
• Home page: thalljiscience.github.io
• Last updated: July 3rd, 2013

Clone manager 8 sequence alignment in Description

clustalx

Clustal X is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for performing multiple sequence and profile alignments and analysing the results.The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated allowing you to highlight conserved features in the alignment.

• Publisher: European Bioinformatics Institute
• Home page: www.clustal.org
• Last updated: December 1st, 2010

Cn3D

Cn3D (to be read "see in 3D") is an application offered as support for web browsers so that one can view 3D structures from the NCBI Entrez Structure database. Cn3D permits the simultaneous display of structure, sequence and alignment of bio-molecules. The utility can make appropriate correlations between structure and sequence information.

• Publisher: NCBI
• Home page: www.ncbi.nlm.nih.gov
• Last updated: June 6th, 2011

Vector NTI Advance

Vector NTI Advance is a program that offers unparalleled, multi-modular, integrated sequence analysis and data management tools. It provides multiple sequence alignment of proteins and DNAs, alignment statistics, cladograms, alignment editing, annotation and repeat identification.

• Publisher: Invitrogen Corporation
• Last updated: September 1st, 2014

DNAMAN

DNAMAN is a one-for-all software package for molecular biology applications. This package provides an integrated system with versatile functions for high efficiency sequence analysis. It can also perform multiple sequence alignment, designing PCR primers, protein sequence analysis or drawing plasmids.

• Publisher: Lynnon Corporation
• Home page: www.lynnon.com
• Last updated: March 31st, 2016

DAMBE

DAMBE is an integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequence data. Main features: - General sequence alignment with nucleotide and amino acid sequences - Aligning protein-coding nucleotide sequences against aligned amino acid sequences - Maximum parsimony methods - Maximum likelihood methods

• Publisher: XiaLab
• Home page: dambe.bio.uottawa.ca
• Last updated: April 17th, 2020

Additional Clone manager 8 sequence alignment selection

MEGA

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses. MEGA is a multi-threaded Windows application. It runs on all releases of Microsoft Windows operating system.

• Publisher: Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S
• Home page: www.megasoftware.net
• Last updated: May 9th, 2011

GeneDoc

GeneDoc installs as a regular windows program, into a GeneDoc program group. After starting GeneDoc, use file open and read in a MSF (Multiple Sequence File) file. GeneDoc saves configuration information for these files in the comment section of the MSF, so if the file was saved by GeneDoc, then it will be reopened with the same settings it was last saved with.

• Publisher: nrbsc
• Last updated: April 3rd, 2008

ClustalW2

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

• Publisher: University College Dublin
• Home page: www.ebi.ac.uk
• Last updated: December 24th, 2010

Jalview

Jalview is a free program for multiple sequence alignment editing, visualization and analysis. You can use it to view and edit sequence alignments, analyze them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.

• Publisher: The Barton Group
• Home page: www.jalview.org
• Last updated: July 18th, 2023

Unipro UGENE

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.Main features:-Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; -HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; -Visual and interactive genome browsing including circular plasmid view;

• Publisher: Unipro, Russia
• Home page: ugene.unipro.ru
• Last updated: July 29th, 2020

Mesquite

Mesquite is modular, extendible application for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis.

• Publisher: Mesquite Project
• Last updated: May 14th, 2015

NeXplorer

Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).

• Publisher: astoltzfus, vivekgopalan
• Home page: nexplorer.sf.net
• Last updated: October 24th, 2011

Schrodinger Prime

Schrodinger Prime is a powerful and innovative package for accurate protein structure predictions. It provides an easy-to-use interface that takes a novice user intuitively from sequence to alignment to refined structure. Prime also offers expert users complete control over calculational settings to maximize accuracy of predictions.

• Publisher: Schrodinger LLC
• Home page: www.schrodinger.com
• Last updated: June 29th, 2015

BSqAn

BioSeqAnalyzer is a tool for BioInformatics sequence analysis. Supports the following Sequence Analysis operations: - Scoring an alignment of two sequences - Linear global alignment of two sequences - Affine global alignment of two sequences - Local alignment of two sequences - Multiple alignment of two or more sequences - Building Hidden Markov Models profiles and more.

• Publisher: Arun Jagota / Jim Serwer
• Home page: www.bsqan.com
• Last updated: May 22nd, 2012

BSEdit

BSEdit is a WYSIWYG and efficient multiple sequence alignment editor. It can handle multiple alignments simutaneously with separated views which all had user friendly interfaces integrated with many methods. Alignment can be manually edited conveniently.

• Publisher: BSEdit
• Last updated: December 23rd, 2020