Dna sequence shuffler in Title/Summary

DNA Baser

DNA Baser Sequence Assembler is easy to use software for DNA sequence assembly/alignment, DNA sequence analysis, DNA Sequence manipulation and conversion, contig editing and mutation detection.Main features: - Edit and view chromatograms. - Cut primers. - Assemble contigs. - Reverse complement sequences. - Convert between ABI, SCF, FASTA, GBK, etc formats.

• Publisher: Heracle BioSoft SRL
• Home page: www.dnabaser.com
• Last updated: March 21st, 2014

DNA Master

DNA Master is a freeware DNA sequence editor and analysis package. This program is quite powerful in what it can do, and as such does not limit itself in taking up resources. A fast computer with 512 MB of memory (or more) is recommended; greater amounts of memory are required for some functions.

• Publisher: Manic Software
• Last updated: May 27th, 2020

DNA Dragon

DNA Dragon is a powerful DNA sequence contig assembler program. The DNA sequences are assembled into contigs and a direct comparision of trace date with nucleotide data is possible. It also allows for proofreading and base editing. It handles more than 100000 samples from sequence formats (FASTA, GenBank, EMBL), trace file formats (SCF, ABI, AB1) and next generation sequencing file formats.

• Publisher: SequentiX - Digital DNA Processing
• Home page: www.dna-dragon.com
• Last updated: March 6th, 2015

Dna sequence shuffler in Description

Gene Construction Kit

Gene Construction Kit is a program that allows easy manipulation of DNA sequences, either graphically or as sequence text. It eliminates tedious examination of DNA sequence data by automatically identifying open reading frames (ORF's), keeping track of sticky ends during cutting and pasting of restriction enzyme digestion fragments.

• Publisher: Textco, Inc.
• Home page: www.textco.com
• Last updated: September 25th, 2014

SnapGene Viewer

SnapGene Viewer allows you to create, browse, and share richly annotated DNA sequence files up to 1 Gbp in length. It provides an interactive interface where you can customize the display of enzyme sites, features, primers, ORFs, DNA colors, etc. You can easily make insertions, deletions, replacements, and case changes from this program.

• Publisher: GSL Biotech LLC
• Home page: www.snapgene.com
• Last updated: July 18th, 2023

CLC DNA Workbench

With CLC DNA Workbench you will have easy access to a large number of integrated research tools.CLC DNA Workbench creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.

• Publisher: CLC bio
• Home page: www.clcbio.com
• Last updated: July 20th, 2012

SnapGene

SnapGene is a program that allows users to view, edit, and annotate biochemical sequences, such as proteins and DNA. It has a colorful interface that makes these tasks more user-friendly. It also makes extensive use of graphics, so the information is displayed in a clear manner.

• Publisher: GSL Biotech LLC
• Home page: www.snapgene.com
• Last updated: July 18th, 2023

ChromasPro

ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available.

• Publisher: Technelysium Pty Ltd
• Home page: www.technelysium.com.au
• Last updated: May 3rd, 2023

Additional Dna sequence shuffler selection

FinchTV

With over 60,000 downloads to date, Geospiza’s FinchTV is the popular way to view DNA sequence traces on Linux, Mac OSX, Windows, and Solaris. FinchTV started as the only chromatogram viewer that can display an entire trace in a scalable multi-pane view. And it leads the way with raw data views, BLAST searching and the ability to reverse complement sequences and traces.

• Publisher: Geospiza
• Last updated: March 1st, 2008

Geneious

Geneious is a research tool designed for biologists and not computer scientists. Main features: - Drag and drop to convert and import sequence data. - Powerful SNP detection and variant calling. - Streamlined microsatellite genotyping. - Tree building and viewing without juggling files. - Add your favourite algorithm, database or visualization to Geneious.

• Publisher: Biomatters Ltd.
• Home page: www.geneious.com
• Last updated: December 4th, 2018

DnaSP

DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. DnaSP can estimate several measures of DNA sequence variation within and between populations, as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters.

• Publisher: Universitat de Barcelona
• Home page: www.ub.edu
• Last updated: May 29th, 2010

Gene Runner

Gene Runner is an easy-to-use DNA sequence analyzer program. It provides many useful annotations about a sequence, one of the more interesting annotations being features. The feature annotations indicate feature locations in a sequence that have been determined by experiment or by computer analysis. The location of a feature may be very simple, one base or base range, or very complicated.

• Publisher: Frank Buquicchio and Michael Spruyt
• Last updated: July 31st, 2016

Sequencher

Sequencher is a DNA sequence assembly and analysis utility. The app has integrated the comprehensive Cufflinks suite for in-depth transcript analysis and differential gene expression of your RNA-Seq data. Sequencher can easily generate unique visualizations of your RNA-Seq data with custom plots and charts giving you publication-ready graphics in seconds.

• Publisher: Gene Codes Corporation
• Home page: www.genecodes.com
• Last updated: November 9th, 2015

CLC Main Workbench

CLC Main Workbench can be used for DNA, RNA, and protein sequence data analysis. It can do gene expression analysis, primer design, molecular cloning, phylogenetic analyses, etc. It also has features such as advanced RNA structure prediction and editing and integrated 3D molecule view.

• Publisher: CLC bio, a QIAGEN Company.
• Last updated: June 16th, 2021

TOPALi

TOPALi provides an intuitive graphical interface for working with existing statistical methods designed for detecting recombination in DNA sequence alignments. Once recombinant regions have been identified, further (automated if desired) analysis is then possible, including the creation of Phylogenetic trees, mosaic structure predictions, and HTML report generation.

• Publisher: Biomathematics & Statistics Scotland
• Home page: www.topali.org
• Last updated: March 31st, 2010

Vocabulon

Vocabulon allows you to reconstruct conserved words that appear in DNA sequence with a certain frequency. The algorithm is based on a dictionary model description of DNA sequence and can be use both as a tool for de novo discovery of motifs, as well as for the localization of known motifs in DNA sequence.

• Publisher: genetics.ucla
• Last updated: December 10th, 2009

Genomica

Genomica is an analysis and visualization tool for genomic data, which can integrate gene expression data, DNA sequence data, and gene and experiment annotation information. By creating a module map, you can extract modules and characterize gene-expression profiles as a combination of activated and deactivated modules or gene sets.

• Publisher: Weizmann Institute
• Last updated: July 27th, 2011

GeneStudio Pro

GeneStudio Pro is a modern suite of molecular biology programs for the Windows platform built on the sequence format conversion engine, SeqVerter. All manipulations with sequences of different formats are thus seamless and transparent for the user. GeneStudio Pro has an intuitive, user-friendly interface; most operations are done through drag-and-drop operations.

• Publisher: GeneStudio, Inc.
• Last updated: July 30th, 2016