Illumina cnv in Title/Summary

Illumina cnvPartition CNV Analysis Plug-in

The cnvPartition CNV Analysis Plug-in is a software library that works with Illumina’s GenomeStudio data analysis software. The parameters can be changed via an editable configuration file. The program features Confidence Threshold parameter, Probe Gap Size Threshold parameter, and more.

• Publisher: Illumina, Inc.
• Last updated: May 31st, 2015

Universal CNV Adapter

The Universal CNV Adapter Plug-in is an easy to use software library that works with Illumina’s GenomeStudio data analysis software, and with separately-installed, Illumina- or third-party-provided executable programs for CNV (copy number variation) analysis.

• Publisher: Illumina
• Last updated: May 25th, 2012

Illumina Merlin Input Report

The Illumina BeadStudio Merlin Input Report Plug-in is a software plug-in that works with Illumina’s BeadStudio Genotyping module v3.2 and above. This plug-in allows you to create input files for the Merlin application developed by the Abecasis group at the University of Michigan. v2.0.1 includes an important fix.

• Publisher: Illumina
• Last updated: March 2nd, 2012

Illumina cnv in Description

Illumina Haploview Input Report

The Illumina Haploview Input Report Plug-in is a software plug-in that works with Illumina’s GenomeStudio Genotyping Module. This plug-in allows you to create input files for the Haploview application developed by the Broad Institute. The main function of this plug-in is the export GT data for viewing in Haploview.

• Publisher: Illumina
• Last updated: October 27th, 2011

ST Thumbnails Explorer

ST Thumbnails Explorer is a perfect thumbnail viewer and photo manager with explorer interface. It allows you to browse, zoom, copy and move any thumbnail or image file. ST Thumbnails Explorer supports every thumbnail file like Adobe Illustrator v.7-11, CorelDRAW v.4-12, Macromedia FreeHand v.7-11, CorelXARA / Xara X etc. Folder tree and drag/drop feature enables the user to explore faster.

• Publisher: Softfields Technologies
• Last updated: May 26th, 2020

Genotyping Console

Genotyping Console is available for analysis of Genome-Wide Human SNP Array. GTC Software integrates single nucleotide polymorphism (SNP) genotyping, indel detection, copy number variation (CNV) identification, and cytogenetic analyses into one application.

• Publisher: Affymetrix
• Home page: www.affymetrix.com
• Last updated: November 9th, 2015

NimbleScan

For high-volume users, NimbleScan software can give you your own array data pipeline. Input array images and NimbleScan can automatically place an accurately aligned grid and extract data from 1 or 2 color images. Advanced reporting capabilities provide application-specific analysis of CGH/CNV, ,Microbial Resequencing and ChIP-chip array datasets for easy interpretation of experimental results.

• Publisher: NimbleGen Systems Inc.
• Last updated: July 16th, 2012

Plink

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data).

• Publisher: Sputnik Games
• Last updated: April 26th, 2012

Additional Illumina cnv selection

Illumina Sequencing Analysis Viewer

The Sequencing Analysis Viewer (SAV) is an application that allows you, in real time, to view important quality metrics generated by the Real-Time Analysis (RTA) software on the Illumina sequencing systems. The Sequencing Analysis Viewer can be installed on a personal workstation to view quality metrics from a remote location.

• Publisher: Illumina
• Last updated: October 25th, 2015

Illumina Experiment Manager

The Illumina Experiment Manager software helps you create and edit well-formed sample sheets for Illumina sequencers and analysis software. The Experiment Manager can detect and warn of sub-optimal index combinations. By creating the sample sheet prior to sample or library preparation, you can try a different index combination without risking your samples.

• Publisher: Illumina, Inc.
• Home page: support.illumina.com
• Last updated: October 20th, 2015

Illumina GenomeStudio Methylation Module

With GenomeStudio Data Analysis Software you can visualize and analyze data generated by all of Illumina's platforms. With the Methylation Module you can: - Detect cytosine methylation at single-base resolution - Identify methylation signatures across the entire genome

• Publisher: Illumina
• Last updated: April 16th, 2012

Illumina MiSeq Reporter Software

MiSeq Reporter (MSR) performs secondary data analysis, and is pre-installed on MiSeq sequencers. MSR processes base calls generated on-instrument during the sequencing run by Real Time Analysis software. Upon completion of real-time analysis, MSR launches automatically. It produces information about alignment, structural variants, and contig assemblies for each genome and sample.

• Publisher: Illumina Inc.
• Home page: www.illumina.com
• Last updated: May 30th, 2015

Illumina VariantStudio

Illumina VariantStudio is a data analysis program that enables researchers to quickly identify and classify disease-relevant variants, and then communicate significant findings in a structured report. It provides an extensive set of filters and efficient categorization processes that streamlines assessment of biologically relevant variants.

• Publisher: Illumina, Inc.
• Home page: www.illumina.com
• Last updated: January 15th, 2015

Illumina KaryoStudio

KaryoStudio has been designed specifically for cytogeneticists who are using Illumina’s Infinium products to detect aberrations in the genome. KaryoStudio accepts Infinium data, automatically performs normalization, scans data for aberrations, displays the analyzed data allowing interpretation by the use, and generates reports useful for interpreting results.

• Publisher: Illumina
• Home page: support.illumina.com
• Last updated: July 25th, 2013

Illumina GenomeStudio DNA Sequencing Module

It empowers efficient data analysis for whole-genome sequencing and resequencing experiments performed using the Genome Analyzer. It displays genome-wide consensus alignments using single-read and paired-end sequencing data as well as SNP discovery and validation experiments using output files generated in the CASAVA module of the Genome Analyzer Pipeline analysis software.

• Publisher: Illumina
• Last updated: April 2nd, 2012

ChromasPro

ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available.

• Publisher: Technelysium Pty Ltd
• Home page: www.technelysium.com.au
• Last updated: May 3rd, 2023

CLC Genomics Workbench

CLC Genomics Workbench is a program that allows you to analyze, compare and visualize NGS data. The program uses a SIMD-accelerated assembly algorithm that can analyze high-throughput sequencing data faster. Also, it supports major next generation sequencing platforms, such as SOLiD, Ion Torrent, Complete Genomics, 454, and Illumina Genome Analyzer.

• Publisher: CLC bio A/S
• Last updated: August 17th, 2016

EcoStudy

EcoStudy is a powerful data analysis component of Eco. EcoStudy enables you to analyze a run on Eco and to combine data from one or more Eco experiments into a study for analysis. The program supports the Multiple Experiment Analysis (MEA), which is the analysis of data from multiple plates for Standard Curve, Relative Quantification and Genotyping experiments.

• Publisher: Illumina
• Last updated: March 26th, 2014