Python microarray data in Title/Summary

GA Fuzzy Clustering

Microarray Fuzzy Clustering is a clustering tool for microarray data. It implements fuzzy c-mean clustering algorithm improved with Genetic algorithm to search for global optimum. Biorainbow highly appreciate all fedback regarding improvements of their software. Biorainbow pays much attention to their customers support.

• Publisher: Biorainbow
• Last updated: July 20th, 2011

GenStat Microarray Examples (12th Edition)

A microarray is a glass slide or silicon chip that has had a library (a collection of DNA sequences) of single stranded DNA fragments laid down on its surface. The size of the libraries can be very large from 1000 to 150,000 with the highest density slides.

• Publisher: VSN International
• Home page: www.vsni.co.uk
• Last updated: December 12th, 2009

Python xlrd

Python xlrd is a library for developers to extract data from Microsoft Excel (tm) spreadsheet files. The program enables you to extract data from Excel spreadsheets (.xls and .xlsx, versions 2.0 onwards) on any platform. It offers strong support for Excel dates.

• Publisher: John Machin
• Home page: pypi.python.org
• Last updated: June 25th, 2013

Python microarray data in Description

ArrayTrack (Non-FDA Network)

ArrayTrack™ provides an integrated solution for managing, analyzing, and interpreting microarray gene expression data. Specifically, ArrayTrack™ is MIAME (Minimum Information About A Microarray Experiment)-supportive for storing both microarray data and experiment parameters associated with a pharmacogenomics or toxicogenomics study.

• Publisher: NCTR/FDA
• Last updated: December 20th, 2011

BRB-ArrayTools

BRB-ArrayTools is an integrated package for the visualization and statistical analysis of DNA microarray gene expression data. It was developed by professional statisticians experienced in the analysis of microarray data and involved in the development of improved methods for the design and analysis of microarray based experiments.

• Publisher: Richard Simon & BRB-ArrayTools Development Team
• Last updated: December 14th, 2015

ExpressConverter

ExpressConverter is a file transformation tool that reads microarray data files in a variety of file formats and generates TIGR MultiExperiment Viewer file (.mev) as output so that the microarray data can be uploaded to the database with MADAM and analyzed with MIDAS and MEV.

• Publisher: The Institue for Genomic Research (TIRG)
• Last updated: May 22nd, 2012

GeneSpringGX

Agilent's GeneSpring GX software provides powerful, accessible statistical tools for fast visualization and analysis of transcriptomics, genomics, proteomics and metabolomics data. Designed specifically for the needs of biologists, GeneSpring GX offers an interactive desktop computing environment that promotes investigation and enables understanding of microarray data within a biological context.

• Publisher: Strand Life Sciences Pvt Ltd
• Home page: www.genomics.agilent.com
• Last updated: February 22nd, 2012

Python - Gnuplot

Gnuplot.py is a Python package that interfaces to gnuplot, the popular open-source plotting program. It allows you to use gnuplot from within Python to plot arrays of data from memory, data files, or mathematical functions. If you use Python to perform computations or as 'glue' for numerical programs, you can use this package to plot data on the fly as they are computed.

• Publisher: pythonxy.com
• Home page: gnuplot-py.sourceforge.net
• Last updated: May 10th, 2012

Additional Python microarray data selection

ArrayStar

ArrayStar is a powerful software tool for analyzing both global gene expression experiments as well as sequence variation data across a group of samples. Use statistical tools in conjunction with the visualizations to isolate gene sets of interest and identify their biological significance. ArrayStar also offers the optional QSeq application, for RNA-Seq, ChIP-Seq, and miRNA analysis.

• Publisher: DNASTAR
• Last updated: July 20th, 2012

Vector Xpression

Vector Xpression™ is proven software with a comprehensive set of peer-reviewed gene expression analysis tools in a vivid, graphically rich interface. Vector Xpression™ will help you find the meaning in your microarray data, regardless of your statistics or computer expertise.

• Publisher: Infomax
• Last updated: May 20th, 2013

TMA Foresight

In a typical tissue microarray study, every core is associated with data elements such as the core image and patient demographics. Such a tissue array experiment calls for an extensive tissue microarray data management and analysis tool to draw valid inferences from the data generated.

• Publisher: PREMIER Biosoft International
• Home page: www.premierbiosoft.com
• Last updated: February 2nd, 2011

ResqMi

ResqMi furthermore features new visualization and export tools for CHP and CEL files, including an in-detail array image view for CEL file quality control. This tool allows to display intensities and other measurements from CEL file features as physically layouted on the array. Different plots, also for comparing two arrays, and color gradients are available.

• Publisher: pas

Python

Python is an object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. It comes with a large standard library that supports many common programming tasks, such as connecting to web servers, searching text with regular expressions, reading, and modifying files.

• Publisher: Python Software Foundation
• Home page: www.python.org
• Last updated: February 7th, 2024

Python (x,y)

Its purpose is to help scientific programmers used to interpreted languages (such as MATLAB or IDL) or compiled languages (C/C++ or Fortran) to switch to Python. C/C++ or Fortran programmers should appreciate to reuse their code "as is" by wrapping it so it can be called directly from Python scripts.

• Publisher: Pierre Raybaut & Gabi Davar
• Home page: python-xy.github.io
• Last updated: February 25th, 2016

Python - IPython

The goal of IPython is to create a comprehensive environment for interactive and exploratory computing. To support this goal, IPython has two main components: * An enhanced interactive Python shell. * An architecture for interactive parallel computing.

• Publisher: SciPy
• Last updated: January 17th, 2011

Python - xy

Python(x,y) is a free scientific and engineering development software for numerical computations, data analysis and data visualization based on Python programming language, Qt graphical user interfaces, Eclipse integrated development environment and Spyder interactive scientific development environment.

• Publisher: pythonxy
• Last updated: December 9th, 2013

Python - h5py

HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. A major design goal of h5py is interoperability; you can read your existing data in HDF5 format, and create new files that any HDF5- aware program can understand.

• Publisher: Andrew Collette
• Last updated: October 1st, 2011

Python - guidata

guidata is a Python library generating graphical user interfaces for easy dataset editing and display. It also provides helpers and application development tools for PyQt4 and allows the user to enter each parameter through a graphical user interface, using widgets which are adapted to data types.

• Publisher: Pierre Raybaut
• Home page: code.google.com
• Last updated: August 1st, 2016