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Clc gene enrichment in Title/Summary

Gene Set Enrichment Analysis

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states .The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software.

Publisher: Broad Institute of MIT and Harvard
Home page: www.broadinstitute.org
Last updated: October 31st, 2011

CLC Protein Workbench

CLC Protein Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. CLC Protein Workbench includes the following features:Protein sequence analysis, Database searches, Pattern search and Project and data management.

Publisher: CLC bio
Home page: www.clcbio.com
Last updated: April 18th, 2012

CLC Main Workbench

CLC Main Workbench can be used for DNA, RNA, and protein sequence data analysis. It can do gene expression analysis, primer design, molecular cloning, phylogenetic analyses, etc. It also has features such as advanced RNA structure prediction and editing and integrated 3D molecule view.

Publisher: CLC bio, a QIAGEN Company.
Last updated: June 16th, 2021

Clc gene enrichment in Description

CLC Editor

CLC Editor also allows changing keys and access rights (MIFARE™ Classic) and card locking (MIFARE™ Ultralight). CLC Editor requires a PC/SC compliant contactless smart card reader. Since the used commands are proprietary to Identive, CLC Editor will not work with other card readers.

Publisher: Infintuary
Home page: www.infintuary.org
Last updated: December 1st, 2017

Genomica

Genomica is an analysis and visualization tool for genomic data, which can integrate gene expression data, DNA sequence data, and gene and experiment annotation information. By creating a module map, you can extract modules and characterize gene-expression profiles as a combination of activated and deactivated modules or gene sets.

Publisher: Weizmann Institute
Last updated: July 27th, 2011

CLC RNA Workbench

RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms. CLC RNA Workbench is available on Windows, Mac OS X, and Linux platforms. The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options.

Publisher: CLC bio A/S
Home page: www.clcbio.com
Last updated: April 3rd, 2012

Tiling Analysis Software

- Option to write either CHP or BAR file. Specify option in the Export tab of the Default Properties dialog. - Added the scaling target intensity to the file properties function. - Enrichment analysis. This analysis performs a simulation to assess the likelihood that the observed overlap is different from the expected overlap with no enrichment.

Publisher: Affymetrix, Inc.
Last updated: June 14th, 2008

GenMAPP

Integrated with GenMAPP are programs to perform a global analysis of gene expression or genomic data in the context of hundreds of pathway MAPPs and thousands of Gene Ontology Terms (MAPPFinder), import lists of genes/proteins to build new MAPPs (MAPPBuilder), and export archives of MAPPs and expression/genomic data to the web.

Publisher: The J. David Gladstone Institutes
Last updated: March 31st, 2012

Additional Clc gene enrichment selection

CLC Sequence Viewer

CLC Sequence Viewer features Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases, all types of files can be saved in local projects and launched from the program, etc.

Publisher: QIAGEN
Last updated: November 23rd, 2017

Gene Runner

Gene Runner is an easy-to-use DNA sequence analyzer program. It provides many useful annotations about a sequence, one of the more interesting annotations being features. The feature annotations indicate feature locations in a sequence that have been determined by experiment or by computer analysis. The location of a feature may be very simple, one base or base range, or very complicated.

Publisher: Frank Buquicchio and Michael Spruyt
Last updated: July 31st, 2016

Rotor-Gene

Rotor-Gene Q software package supports all current state-of-the art real-time analysis procedures from basic to advanced algorithms. This provides complete freedom to analyze your valuable experimental data and increases the reliability of your results. Data security is assured and all process steps are trackable from starting the run to exporting the results.

Publisher: QIAGEN
Home page: www.qiagen.com
Last updated: December 14th, 2009

CLC Genomics Workbench

CLC Genomics Workbench is a program that allows you to analyze, compare and visualize NGS data. The program uses a SIMD-accelerated assembly algorithm that can analyze high-throughput sequencing data faster. Also, it supports major next generation sequencing platforms, such as SOLiD, Ion Torrent, Complete Genomics, 454, and Illumina Genome Analyzer.

Publisher: CLC bio A/S
Last updated: August 17th, 2016

CLC Drug Discovery Workbench

CLC Drug Discovery Workbench is your virtual lab bench. Main features: - Molecule 3D structure import: Mol2, SDF, PDB. - Direct download of PDB structures from NCBI. - Quick-style options including ball-n-sticks and molecular surfaces. - Custom visualization applied to selected atoms. - Save molecule visualizations on data. - Molecule tables with 2D depiction of molecules.

Publisher: CLC bio A/S
Home page: www.clcbio.com
Last updated: August 5th, 2016

Gene Construction Kit

Gene Construction Kit is a program that allows easy manipulation of DNA sequences, either graphically or as sequence text. It eliminates tedious examination of DNA sequence data by automatically identifying open reading frames (ORF's), keeping track of sticky ends during cutting and pasting of restriction enzyme digestion fragments.

Publisher: Textco, Inc.
Home page: www.textco.com
Last updated: September 25th, 2014

CLC DNA Workbench

With CLC DNA Workbench you will have easy access to a large number of integrated research tools.CLC DNA Workbench creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.

Publisher: CLC bio
Home page: www.clcbio.com
Last updated: July 20th, 2012

Gene Machine- The Lac Operon

Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Predict the effects on lactose metabolism when the various genes and DNA control elements are mutated. Explain the roles of LacI, LacZ, and LacY in lactose regulation.

Publisher: University of Colorado, Department of Physics
Home page: phet.colorado.edu
Last updated: October 1st, 2013

Gene Expression - The Basics

Gene Expression - The Basics is a Java simulation with educational purposes. It deals with the topics of gene expression, DNA transcription, protein synthesis, and cells. See if you can generate and collect three types of protein, then move on to explore the factors that affect protein synthesis in a cell.

Publisher: University of Colorado, Department of Physics
Home page: phet.colorado.edu
Last updated: December 4th, 2012

Gene Inspector

The Gene Inspector software program is a unique combination of a versatile electronic laboratory notebook, a comprehensive DNA and protein sequence analysis package, and a powerful illustration tool. The program provides the ability to annotate experimental results and analyses in a single location, rather than keeping sequence analyses separate from experiment notes.

Publisher: Textco BioSoftware, Inc.
Home page: www.textco.com
Last updated: February 25th, 2017