Gene set enrichment analysis in Title/Summary
Gene Set Enrichment Analysis
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states .The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software.
- Publisher: Broad Institute of MIT and Harvard
- Last updated: October 31st, 2011
Accelrys Gene
The program allows you to process, analyze, annotate, and report on gene expression experiments, including the individual target genes. Core functionality is based on BioConductor, the open source and open development software project for the analysis and comprehension of genomic data, which is in turn based on R, the well-known public domain package for statistical computing and graphics.
- Publisher: Accelrys Inc.
- Last updated: November 11th, 2010
Gene Expression - The Basics
Gene Expression - The Basics is a Java simulation with educational purposes. It deals with the topics of gene expression, DNA transcription, protein synthesis, and cells. See if you can generate and collect three types of protein, then move on to explore the factors that affect protein synthesis in a cell.
- Publisher: University of Colorado, Department of Physics
- Home page: phet.colorado.edu
- Last updated: December 4th, 2012
Gene set enrichment analysis in Description
Tiling Analysis Software
- Option to write either CHP or BAR file. Specify option in the Export tab of the Default Properties dialog. - Added the scaling target intensity to the file properties function. - Enrichment analysis. This analysis performs a simulation to assess the likelihood that the observed overlap is different from the expected overlap with no enrichment.
- Publisher: Affymetrix, Inc.
- Last updated: June 14th, 2008
Cluster
The open source clustering software implement's the most commonly used clustering methods for gene expression data analysis. The clustering methods can be used in several ways. Cluster provides a Graphical User Interface to access to the clustering routines. It is available for Windows, Mac OS X, and Linux/Unix.
- Publisher: Michiel de Hoon, University of Tokyo
- Home page: bonsai.hgc.jp
- Last updated: April 5th, 2008
4eMka2
4eMka2 is an implementation of the new approach in multiple criteria decision support, combining advantages of rough sets and dominance relation. Main Features : - data validation, - finding the core of criteria and attribute, - finding reducts in the information table, - inducing decision rules using the DOMLEM and ALLRULES algorithms,
- Publisher: Laboratory of Intelligent Decision Support Systems
- Last updated: October 31st, 2010
PIE Well-Test
The PIE well-test analysis program is a complete package for the manipulation and interpretation of pressure transient tests for oil and gas wells. Some of the main features are: - A standard Windows user interface for data manipulation and display of analysis plots. Full copy and paste facilities are available to exchange data with other programs.
- Publisher: WTS Limited
- Home page: www.welltestsolutions.com
- Last updated: April 23rd, 2010
Colasoft Capsa Professional
Capsa Professional is a portable network analyzer for both LANs and WLANs. It performs real-time packet capturing, 24x7 network monitoring, advanced protocol analysis, in-depth packet decoding, and automatic expert diagnosis. Capsa's comprehensive high-level window view of entire network lets you rapidly pinpoint and resolve application problems.
- Publisher: Colasoft LLC
- Home page: www.colasoft.com
- Last updated: June 10th, 2019
Additional Gene set enrichment analysis selection
XLMiner
XLMiner provides a comprehensive set of analysis features based both on statistical and machine learning methods. A problem or a data set can be analyzed by several methods. It is usually a good idea to try different approaches, compare their results, and then choose a model that suits the problem well.
- Publisher: Quantlink
- Home page: www.solver.com
- Last updated: September 2nd, 2011
Golden Cheetah
Golden Cheetah lets you import ride data directly from fitness training and GPS devices of various manufacturers. It provides a rich set of analysis tools such as Critical Power graph, BikeScore calculation, and Pedal force versus pedal velocity. You can also upload/download data files to your Google Drive, Dropbox, Strava, Trainingstagebuch.org, and other cloud services.
- Publisher: Golden Cheetah Developers Team
- Home page: www.goldencheetah.org
- Last updated: March 18th, 2017
Electric Power SpecSizer
Electric Power SpecSizer software from Cat Electric Power provides accurate and timely technical data, robust load models, and optimized algorithms to assist in specifying a properly sized generator set to best meet your power needs. It features an optimized 20-Step Wizard that automatically calculates the least number of steps for building a load scenario.
- Publisher: Caterpillar
- Last updated: August 24th, 2022
i2sm
There are millions of possible colors on most computers. The main thing i2sm does is translate those millions of colors into 128 possible notes. While this seems like an awful lot of data is sort of blurred, i2sm is capable of making some interesting songs.
- Publisher: Fraser Digital
- Home page: i2sm.numberware.net
- Last updated: April 5th, 2010
ExpressionSuite Software
ExpressionSuite Software is a free data-analysis tool that utilizes the comparative CT method to rapidly and accurately quantify relative gene expression across a large number of genes and samples. Its flexibility allows the user to analyze gene expression data on any current Applied Biosystems real-time PCR instrument.
- Publisher: Life Technologies
- Home page: www.appliedbiosystems.com
- Last updated: May 20th, 2015
ORIMA
ORIMA is an LPS add-on providing advanced aerial triangulation and visual analysis tools. The premiere solution for frame, ADS40 and ADS80 sensors, and other digital sensors, ORIMA is proven and robust technology relied on by photogrammetry professionals around the world. Providing a strong set of analysis tools, ORIMA supports production jobs requiring high throughput.
- Publisher: Leica Geosystems Geospatial Imaging, LLC
- Home page: www.erdas.com
- Last updated: July 19th, 2012
Reqchecker
REQCHECKER checks that the requirements defined in some parent documents are well covered in some child documents. It can be used to check the completeness of software documents, of process documents, of training courses etc.
- Publisher: SGSoft
- Home page: sites.google.com
- Last updated: December 8th, 2022
Capsa Network Analyzer
Packet sniffer (network analyzer or network sniffer) for network monitoring and troubleshooting. It allows you to monitor network operations, isolate & solve network problems, identify network bottleneck & bandwidth use, and replay packets.
- Publisher: Colasoft LLC
- Home page: www.colasoft.com
- Last updated: July 18th, 2023
Gene Runner
Gene Runner is an easy-to-use DNA sequence analyzer program. It provides many useful annotations about a sequence, one of the more interesting annotations being features. The feature annotations indicate feature locations in a sequence that have been determined by experiment or by computer analysis. The location of a feature may be very simple, one base or base range, or very complicated.
- Publisher: Frank Buquicchio and Michael Spruyt
- Home page: generunner.net
- Last updated: July 31st, 2016
Citrix Endpoint Analysis SDK
The Citrix Endpoint Analysis Software Development Kit (Endpoint Analysis SDK) for Advanced Access Control is an add-in for Microsoft Visual Studio .NET 2005 that provides instructions for developing and testing C++ and VBScript endpoint analysis scan packages.
- Publisher: Citrix Systems, Inc.
- Last updated: December 6th, 2010
